Populus trichocarpa genome sequence

Due to rapid development of sequencing and genome assembly technologies, the cost for whole genome sequencing has been dropped a lot reaching that 1, dollars per 1 Gbp. First genome of Populus (Populus trichocarpa) was published in , as a model tree. Populus. An improved version (V) of the Populus genome assembly includes 81 Mb of finished clone sequences combined with a new high-density physical map. The genome assembly is approximately Mb arranged in scaffolds with scaffolds greater than 50 kb in size, representing approximately % of the genome. Dec 13,  · Populus trichocarpa was chosen as the first tree to be sequenced because of the relatively small size of its genome. The Populus trichocarpa genome has a haploid chromosome number of 19, and with over Mb is nearly four times larger than the genome of Arabidopsis. There are 44, protein-coding genes.

Populus trichocarpa genome sequence

Populus trichocarpa was sequenced ten times over to attain the highest quality standards and to produce a relatively contiguous, high quality plant genome. Poplar was chosen as the first tree DNA to be sequenced because of its relatively compact genetic complement, some 50 times smaller than the genome of pine, making the poplar an ideal model. All of the 18 putative CesA genes in P. trichocarpa contained the sequence feature characteristics to the Fig. 1 Schematic view of the scattered distribution of the CesA genes over the P. trichocarpa genome. Of the 19 chromosomes in the genome of P. trichocarpa, 11 . Dec 13,  · Populus trichocarpa was chosen as the first tree to be sequenced because of the relatively small size of its genome. The Populus trichocarpa genome has a haploid chromosome number of 19, and with over Mb is nearly four times larger than the genome of Arabidopsis. There are 44, protein-coding genes. Use BLASTn, BLASTp, tBLASTn and tBLASTx to match a query sequence to PtGDB sequences. BLAST-able datasets include Populus trichocarpa genomic DNA, splice-aligned transcripts and proteins, gene models, and other aligned sequences. The Populus trichocarpa Genome Browser hosts Populus trichocarpa genome information and Populus nigra sequence data by using tracks classified in different sections. Each section is exaplained below. Linked tracks provide the corresponding source file in GFF3 format.Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer. × Server Maintenance: Populus trichocarpa. Populus trichocarpa has been selected. Revisiting the sequencing of the first tree genome: Populus trichocarpa. Wullschleger SD(1), Weston DJ, DiFazio SP, Tuskan GA. Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western genes, splice variants, cDNA and protein sequences, non-coding RNAs. Abstract. We report the draft genome of the black cottonwood tree, Populus trichocarpa. Integration of shotgun sequence assembly with genetic. Populus trichocarpa was sequenced ten times over to attain the highest quality standards and to produce a relatively contiguous, high quality.

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